dimsum__filter_single_end_reads: dimsum__filter_single_end_reads

In lehner-lab/DiMSum: A pipeline for processing deep mutational scanning data

dimsum__filter_single_end_reads

Description

Concatentate reads (without reverse complementing second read in pair).

Usage

dimsum__filter_single_end_reads(
  input_FASTQ,
  output_FASTQ,
  output_REPORT,
  min_qual,
  max_ee,
  min_len
)

Arguments

input_FASTQ	Path to first read FASTQ file (required)
output_FASTQ	Path to output FASTQ file (required)
output_REPORT	Path to report file (required)
min_qual	Minimum observed base quality to retain read pair (required)
max_ee	Maximum number of expected errors to retain read pair (required)
min_len	Discard pair if either read is shorter than this (required)

Value

Nothing

lehner-lab/DiMSum documentation built on April 10, 2024, 4:15 a.m.