dimsum__merge_fitness: dimsum__merge_fitness

In lehner-lab/DiMSum: A pipeline for processing deep mutational scanning data

dimsum__merge_fitness

Description

Calculate fitness and count-based error.

Usage

dimsum__merge_fitness(
  dimsum_meta,
  input_dt,
  doubles_dt,
  singles_dt,
  all_reps,
  fitness_outpath,
  report = TRUE,
  report_outpath = NULL
)

Arguments

dimsum_meta	an experiment metadata object (required)
input_dt	input data.table (required)
doubles_dt	doubles data.table (required)
singles_dt	singles data.table (required)
all_reps	list of replicates to retain (required)
fitness_outpath	output path for saved objects (required)
report	whether or not to generate fitness summary plots (default: TRUE)
report_outpath	fitness report output path

Value

Nothing

lehner-lab/DiMSum documentation built on April 10, 2024, 4:15 a.m.