dimsum__fit_error_model: dimsum__fit_error_model

Description Usage Arguments Value

View source: R/dimsum__fit_error_model.R

Description

Fit error model.

Usage

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dimsum__fit_error_model(
  dimsum_meta,
  input_dt,
  all_reps,
  norm_dt,
  Nbootstraps = 100,
  maxN = 10000,
  max_tries_per_fit = 20,
  lower_rep = 1e-04
)

Arguments

dimsum_meta

an experiment metadata object (required)

input_dt

input data.table (required)

all_reps

list of replicates to retain (required)

norm_dt

data.table of normalisation parameters (default:NULL)

Nbootstraps

number of bootstraps (default:100)

maxN

maximum sample size for each bootstrap (default:5000)

max_tries_per_fit

maximum number of fitting attempts (default:20)

lower_rep

replicate error lower bound (default:1e-4)

Value

Nothing


lehner-lab/DiMSum documentation built on Sept. 15, 2021, 12:43 a.m.