API for lehner-lab/DiMSum
A pipeline for processing deep mutational scanning data

Global functions
dimsum Man page Source code
dimsum__aggregate_AA_variants Man page Source code
dimsum__aggregate_AA_variants_fitness Man page Source code
dimsum__bayesian_double_fitness Man page Source code
dimsum__calculate_fitness Man page Source code
dimsum__cbind_fill Man page Source code
dimsum__check_barcode_design Man page Source code
dimsum__check_countfile Man page Source code
dimsum__check_experiment_design Man page Source code
dimsum__check_experiment_design_countfile Man page Source code
dimsum__check_files_exist Man page Source code
dimsum__check_variants Man page Source code
dimsum__concatenate_reads Man page Source code
dimsum__convert_linked_adapters Man page Source code
dimsum__create_dir Man page Source code
dimsum__cutadapt_report Man page Source code
dimsum__debarcode_variants Man page Source code
dimsum__demultiplex_cp_helper Man page Source code
dimsum__demultiplex_helper Man page Source code
dimsum__derange_df Man page Source code
dimsum__detect_sequence_type Man page Source code
dimsum__diagnostics_report Man page Source code
dimsum__error_model Man page Source code
dimsum__error_model_qqplot Man page Source code
dimsum__fastq_splitter Man page Source code
dimsum__fastqc_report Man page Source code
dimsum__filter_nuc_variants Man page Source code
dimsum__filter_reads Man page Source code
dimsum__filter_reads_helper Man page Source code
dimsum__filter_single_end_reads Man page Source code
dimsum__filter_variants_coding Man page Source code
dimsum__filter_variants_noncoding Man page Source code
dimsum__fit_error_model Man page Source code
dimsum__fit_error_model_bootstrap Man page Source code
dimsum__get_barcode_design Man page Source code
dimsum__get_cutadapt_options Man page Source code
dimsum__get_experiment_design Man page Source code
dimsum__gg_color_hue Man page Source code
dimsum__ggpairs_binhex Man page Source code
dimsum__hamming_distance Man page Source code
dimsum__identify_STOP_mutations Man page Source code
dimsum__identify_double_aa_mutations Man page Source code
dimsum__identify_double_nt_mutations Man page Source code
dimsum__identify_permitted_mutations Man page Source code
dimsum__identify_single_aa_mutations Man page Source code
dimsum__identify_single_nt_mutations Man page Source code
dimsum__infer_growth_rates Man page Source code
dimsum__merge_fitness Man page Source code
dimsum__merge_report Man page Source code
dimsum__normalise_fitness Man page Source code
dimsum__parse_cutadapt_output Man page Source code
dimsum__parse_cutadapt_output_single_end Man page Source code
dimsum__parse_minimum_read_count_arguments Man page Source code
dimsum__plot_samplename Man page Source code
dimsum__process_merged_variants Man page Source code
dimsum__range_df Man page Source code
dimsum__remove_internal_constant_region Man page Source code
dimsum__render_report Man page Source code
dimsum__replicate_fitness_deviation Man page Source code
dimsum__sample_count_distributions Man page Source code
dimsum__save_metadata Man page Source code
dimsum__save_png Man page Source code
dimsum__split_helper Man page Source code
dimsum__status_message Man page Source code
dimsum__sum_datatable_columns Man page Source code
dimsum__swap_reads Man page Source code
dimsum__unique_helper Man page Source code
dimsum__unzip_helper Man page Source code
dimsum__validate_input Man page Source code
dimsum__vsearch_report Man page Source code
dimsum__vsearch_single_end_library_helper Man page Source code
dimsum__vsearch_trans_library_helper Man page Source code
dimsum__writeFastq Man page Source code
dimsum_stage_counts_to_fitness Man page Source code
dimsum_stage_cutadapt Man page Source code
dimsum_stage_demultiplex Man page Source code
dimsum_stage_fastqc Man page Source code
dimsum_stage_merge Man page Source code
dimsum_stage_split Man page Source code
dimsum_stage_unique Man page Source code
dimsum_stage_unzip Man page Source code
dimsum_stage_vsearch Man page Source code
lehner-lab/DiMSum documentation built on Sept. 15, 2021, 12:43 a.m.