View source: R/dimsum_stage_vsearch.R
dimsum_stage_vsearch | R Documentation |
Run VSEARCH on all fastq files.
dimsum_stage_vsearch(
dimsum_meta,
vsearch_outpath,
report = TRUE,
report_outpath = NULL,
save_workspace = TRUE
)
dimsum_meta |
an experiment metadata object (required) |
vsearch_outpath |
VSEARCH output path (required) |
report |
whether or not to generate VSEARCH summary plots (default: TRUE) |
report_outpath |
VSEARCH report output path |
save_workspace |
whether or not to save the current workspace (default: TRUE) |
an updated experiment metadata object
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