dimsum__filter_reads: dimsum__filter_reads

Description Usage Arguments Value

View source: R/dimsum__filter_reads.R

Description

Concatenate reads (with or without reverse complementing second read in pair).

Usage

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dimsum__filter_reads(
  input_FASTQ,
  input_REPORT,
  output_FASTQ,
  output_REPORT,
  min_qual
)

Arguments

input_FASTQ

Path to input FASTQ file (required)

input_REPORT

Path to input report file (required)

output_FASTQ

Path to output FASTQ file (required)

output_REPORT

Path to output report file (required)

min_qual

Minimum observed base quality to retain read pair (required)

Value

Nothing


lehner-lab/DiMSum documentation built on Sept. 15, 2021, 12:43 a.m.