dimsum__filter_reads: dimsum__filter_reads

In lehner-lab/DiMSum: A pipeline for processing deep mutational scanning data

dimsum__filter_reads

Description

Concatenate reads (with or without reverse complementing second read in pair).

Usage

dimsum__filter_reads(
  input_FASTQ,
  input_REPORT,
  output_FASTQ,
  output_REPORT,
  min_qual
)

Arguments

input_FASTQ	Path to input FASTQ file (required)
input_REPORT	Path to input report file (required)
output_FASTQ	Path to output FASTQ file (required)
output_REPORT	Path to output report file (required)
min_qual	Minimum observed base quality to retain read pair (required)

Value

Nothing

lehner-lab/DiMSum documentation built on April 10, 2024, 4:15 a.m.