dimsum_stage_fastqc: dimsum_stage_fastqc

In lehner-lab/DiMSum: A pipeline for processing deep mutational scanning data

dimsum_stage_fastqc

Description

Run FASTQC on all fastq files.

Usage

dimsum_stage_fastqc(
  dimsum_meta,
  fastqc_outpath,
  report = TRUE,
  report_outpath = NULL,
  save_workspace = TRUE
)

Arguments

dimsum_meta	an experiment metadata object (required)
fastqc_outpath	FASTQC output path (required)
report	whether or not to generate FASTQC summary plots (default: TRUE)
report_outpath	FASTQC report output path
save_workspace	whether or not to save the current workspace (default: TRUE)

Value

an updated experiment metadata object

lehner-lab/DiMSum documentation built on April 10, 2024, 4:15 a.m.