dimsum__parse_cutadapt_output: dimsum__parse_cutadapt_output

In lehner-lab/DiMSum: A pipeline for processing deep mutational scanning data

dimsum__parse_cutadapt_output

Description

Parse cutadapt stdout.

Usage

dimsum__parse_cutadapt_output(
  file_path,
  ran_cutadapt = T,
  ran_cutadapt_cutonly = F
)

Arguments

file_path	path to cutadapt output file (required)
ran_cutadapt	whether this is a bona fide cutadapt output file (default:T)
ran_cutadapt_cutonly	whether cutadapt was run using "Cut" options only (default:F)

Value

a list of read trimming count statistics

lehner-lab/DiMSum documentation built on April 10, 2024, 4:15 a.m.