construct.Wu: Constructs the SNV-SNV adjacency matrix

In lgl15/cnmtf: Prioritisation of single nucleotide variants using Corrected non-negative matrix tri-factorisation

Description

Function to construct the adjacency matrix Wu for the SNV-SNV network

Usage

construct.Wu(R.snps = NULL, work.dat = NULL, trait.project = NULL,
  dedges = NULL, n.cores = NULL, net.type, tmap = NULL, lhubs = NULL,
  alledges.snp = FALSE)

Arguments

R.snps	list of SNPs
trait.project	project's name to be included in the file name
tmap	mapping of SNPs to gene entrezids
lhubs	list of damaging variants
ncores	number of cores for parallel computing

Value

Wu, G adjacency matrix and graph object of the network

Author(s)

Luis G. Leal, [e-mail]

See Also

Other Preprocessing functions: coding.scheme, construct.Vo, create.network, degree.distribution, kernels.cnmtf, mapply.snpt.synthetic.gwas, rownet.hub, snpt.synthetic.gwas

lgl15/cnmtf documentation built on May 28, 2019, 6:33 p.m.