delta.score: Delta score between clusters

In lgl15/cnmtf: Prioritisation of single nucleotide variants using Corrected non-negative matrix tri-factorisation

Description

Auxiliar function to calculate delta score between clusters of patients.

Usage

delta.score(file.exp1, file.exp2 = NULL, snps.known1, snps.known2,
  print.file = NULL, sig.snp.nmtf = NULL, clus.a = list(c(1)),
  clus.b = list(c(2)))

Arguments

file.exp1	workspace of the experiment (created with function score.cnmtf)
file.exp2	Optional. Workspace of a second experiment.
snps.known1	List of known associations
snps.known2	Second list of known associations
print.file	File to print plots
sig.snp.nmtf	List of significant SNVs in this experiment
clus.a, clus.b	List of clusters of patients to compute delta scores. Clusters in clus.a are compared with clusters in clus.b.
snps.known	List of known associations

Value

dOn Delta Standardised Omega matrix with the delta scores for each pair of clusters.

Author(s)

Luis G. Leal, [e-mail]

See Also

Other Scoring functions: analyze.cnmtf, custom.venn, manhattan.plot, manhattan.table, plot.clusters, rec.list, sd.plot, sd.score

lgl15/cnmtf documentation built on May 28, 2019, 6:33 p.m.