plot.clusters: Plot cNMTF clusters

In lgl15/cnmtf: Prioritisation of single nucleotide variants using Corrected non-negative matrix tri-factorisation

Description

Function to plot heatmaps and clusters of SNPs and patients

Usage

## S3 method for class 'clusters'
plot(file.exp, snps.known, print.file = NULL, maf.snps.cat,
  R.snps)

Arguments

print.file	File to print plots
maf.snps.cat	Minor Allele Frequency
R.snps	List of SNVs
file.exp:	Workspace of the experiment (created with function score.cnmtf)
snps.known:	List of known associations

Value

Plots of clusters printed to print.file

Author(s)

Luis G. Leal, [e-mail]

See Also

Other Scoring functions: analyze.cnmtf, custom.venn, delta.score, manhattan.plot, manhattan.table, rec.list, sd.plot, sd.score

lgl15/cnmtf documentation built on May 28, 2019, 6:33 p.m.