plot.pca: Plot of PCA for patients

In lgl15/cnmtf: Prioritisation of single nucleotide variants using Corrected non-negative matrix tri-factorisation

Description

Function to plot axes of PCA and depict population structures

Usage

## S3 method for class 'pca'
plot(res.pca, var.col = NULL, var.name = "Variable", axes.pca,
  show.legend = TRUE, plot.type = c("ggplot", "default"),
  col.manual = NULL, outl = rep(TRUE, length(var.col)))

Arguments

res.pca	Results of PCA
var.col	variable to colour the points (e.g., population)
axes.pca	vector of axes to plot
plot.type	Using own function or default function
outl	Outliers vector to filter out PCA results

Value

Plot of patients in the principal components space.

lgl15/cnmtf documentation built on May 28, 2019, 6:33 p.m.