manhattan.plot: Manhattan plot

In lgl15/cnmtf: Prioritisation of single nucleotide variants using Corrected non-negative matrix tri-factorisation

Description

Function to plot a Manhattan plot

Usage

manhattan.plot(pvalues, lchr = 1:22, color, pos.snps.known1 = NULL,
  pos.snps.known2 = NULL, print.file = NULL, alpha = 0.05, med.point)

Arguments

pvalues	pvalues of the SNPs in tmanhattan
lchr	List of chromosomes
color	colour for each SNP
pos.snps.known1, pos.snps.known2	Positions of known associations
print.file	PDF file to print plots
alpha	Significance level
med.point	parameter to place the axes labels in a manhattan plot

Value

Print manhattan plot either in console or in print.file

Author(s)

Luis G. Leal, [e-mail]

See Also

Other Scoring functions: analyze.cnmtf, custom.venn, delta.score, manhattan.table, plot.clusters, rec.list, sd.plot, sd.score

lgl15/cnmtf documentation built on May 28, 2019, 6:33 p.m.