Description Usage Arguments Value
View source: R/estimateCellTypeFromProjection.R
Estimate the most likely cell type from the projection to the reference panel
1 2 3 4 5 6 | estimateCellTypeFromProjection(
rca.obj,
confidence = NULL,
ctRank = F,
cSCompute = F
)
|
rca.obj |
RCA object. |
confidence |
a parameter indicating the difference between z-scores. If the difference is below this threshold, the cell type will be set to unknown. Default is NULL. |
ctRank |
parameter indicating whether a relative rank coloring for each cell type shall be computed. Default is FALSE. |
cSCompute |
parameter indicating wheter the confidence score should be computed for each cell. Default is FALSE. |
RCA object.
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