Files in linquynus/RCAv2-beta

Reference Component Analysis

.Rbuildignore

.Rhistory

.Rproj.user/2313D0C8/cpp-definition-cache

.Rproj.user/2313D0C8/pcs/debug-breakpoints.pper

.Rproj.user/2313D0C8/pcs/files-pane.pper

.Rproj.user/2313D0C8/pcs/source-pane.pper

.Rproj.user/2313D0C8/pcs/windowlayoutstate.pper

.Rproj.user/2313D0C8/pcs/workbench-pane.pper

.Rproj.user/2313D0C8/persistent-state

.Rproj.user/2313D0C8/rmd-outputs

.Rproj.user/2313D0C8/saved_source_markers

.Rproj.user/2313D0C8/sources/prop/0D139A01

.Rproj.user/2313D0C8/sources/prop/2F9C35DD

.Rproj.user/2313D0C8/sources/prop/3AFFC44F

.Rproj.user/2313D0C8/sources/prop/A38B1358

.Rproj.user/2313D0C8/sources/prop/C0E8D003

.Rproj.user/2313D0C8/sources/prop/EF258DA7

.Rproj.user/2313D0C8/sources/prop/INDEX

.Rproj.user/shared/notebooks/patch-chunk-names

.Rproj.user/shared/notebooks/paths

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/RCA-class.R R/VioplotQCForCluster.R R/buildReferencePanel.R R/computePairDE.R R/computeUMAP.R R/createRCAObject.R R/createRCAObjectFrom10X.R R/dataClust.R R/dataDE.R R/dataFilter.R R/dataLogNormalise.R R/dataProject.R R/dataSClust.R R/dataSNN.R R/doGoEnrichment.R R/doKEGGEnrichment.R R/estimateCellTypeFromProjection.R R/estimateCellTypeFromProjectionPerCluster.R R/parameterSpaceSNN.R R/parameterSpaceSeurat.R R/performClusterSpecificQC.R R/plotClusterQuality.R R/plotDEHeatmap.R R/plotRCAClusterComposition.R R/plotRCAHeatmap.R R/plotRCAUMAP.R R/plotRCAUMAP3D.R

R/sysdata.rda

RCAv2.Rproj

README.MD

Tutorial/BM_AfterQC.png

Tutorial/BM_BeforeQC.png

Tutorial/BM_heatmap.png

Tutorial/Cluster_Enrichment.png

Tutorial/Combined_UMAPs_Seurat_RCA.png

Tutorial/DE_Heatmaps.png

Tutorial/Elbow.png

Tutorial/Example_3D_Umap.png

Tutorial/Heatmap_Example_With_Threshold.png

Tutorial/OverviewFig.png

Tutorial/ParameterPlotDBSCAN.PNG

Tutorial/PerClusterAssignment.png

Tutorial/QC_Example.png

Tutorial/RCA_GO_Example.png

Tutorial/RCA_Heatmap_Seurat.png

Tutorial/RCA_KEGG_Example.png

Tutorial/UMAP_Seurat.png

Tutorial/Umap_ClusterFree.png

Tutorial/Umap_NK_marker_CD56_Example.png

Tutorial/Umap_clusters_Example.png

Tutorial/Umap_ct_based_clustering_Example.png

man/ComputePairWiseDE.Rd man/RCA-class.Rd man/VioplotQCForCluster.Rd man/buildReferencePanel.Rd man/computeUMAP.Rd man/createRCAObject.Rd man/createRCAObjectFrom10X.Rd man/dataClust.Rd man/dataDE.Rd man/dataFilter.Rd man/dataLogNormalise.Rd man/dataProject.Rd man/dataSClust.Rd man/dataSNN.Rd man/doEnrichGo.Rd man/doEnrichKEGG.Rd man/estimateCellTypeFromProjection.Rd man/estimateCellTypeFromProjectionPerCluster.Rd man/parameterSpaceSNN.Rd man/parameterSpaceSeurat.Rd man/performClusterSpecificQC.Rd man/plotClusterQuality.Rd man/plotDEHeatmap.Rd man/plotRCAClusterComposition.Rd man/plotRCAHeatmap.Rd man/plotRCAUMAP.Rd man/plotRCAUMAP3D.Rd

linquynus/RCAv2-beta documentation built on Aug. 9, 2020, 12:34 a.m.