Description Usage Arguments Value
Filter the dataset and remove genes and cells that could be of poor quality using user-defined thresholds
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rca.obj |
RCA object. |
nGene.thresholds |
numeric vector with lower and upper nGene thresholds |
nUMI.thresholds |
numeric vector with lower and upper nUMI thresholds |
percent.mito.thresholds |
numeric vector with lower and upper pMito thresholds |
min.cell.exp |
minimum number of cells a gene must be expressed in |
plot |
boolean - if True, plot data filter metrics |
folderpath |
path to save data filter metric plots to |
filename |
file name of saved plots |
RCA object.
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