parameterSpaceSNN: Generates an overview on the dependence of SNN parameters to...

Description Usage Arguments Value

View source: R/parameterSpaceSNN.R

Description

Generates an overview on the dependence of SNN parameters to the number of clusters

Usage

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parameterSpaceSNN(
  rca.obj,
  kL = c(30:50),
  epsL = c(5:20),
  minPtsL = c(5:10),
  folderpath = ".",
  filename = "Graph_based_Clustering_Parameter_Space.html"
)

Arguments

rca.obj

RCA object.

kL

vector of k values to be used. Default is 10-50.

epsL

vector of values indicating the number of neighbours between two nodes such that cells are shared. Default is 5 to 20.

minPtsL

Vector of minimum points with at least eps neighbours to be considered a core point. Default is 5 to 10.

folderpath

Path to store the html file. Defaults to working directory.

filename

name of the html file produced that visuzalizes the parameter space.

Value

a data frame holding parameter values and resulting cluster numbers.


linquynus/RCAv2-beta documentation built on Aug. 9, 2020, 12:34 a.m.