plotDEHeatmap: Plot heatmap of DE genes

In linquynus/RCAv2-beta: Reference Component Analysis

Description

Plot heatmap of DE genes

Usage

plotDEHeatmap(
  rca.obj,
  scale = FALSE,
  width = 20,
  height = 20,
  folderpath = ".",
  filename = "RCA_DE_Heatmap.pdf",
  extraCellProperty = NULL,
  color_up,
  color_low
)

Arguments

rca.obj	data matrix (genes x cells)
scale	TRUE if genes should be z-transformed before plotting. Default is FALSE.
width	width of plot in inches. Default is 20.
height	height of plot in inches. Default is 20.
folderpath	path to save heatmap to
filename	file name of saved heatmap
extraCellProperty	vector indicating cell property to be plotted in heatmap
color_up	upper limit of color scale
color_low	lower limit of color scale

linquynus/RCAv2-beta documentation built on Aug. 9, 2020, 12:34 a.m.