Files in lpantano/isomiRs
Analyze isomiRs and miRNAs from small RNA-seq
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/AllMethods.R
R/PLSDA.R
R/data.R
R/internal.R
R/isomiRs-package.R
R/isomiRs.R
R/mirData-data.R
R/targets.R
R/zzz.R
README.md
_pkgdown.yml
data/dat286.rda
data/datalist
data/isoExample.rda
data/mirData.rda
data/mirTritation.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/framed.sty
docs/articles/index.html
docs/articles/isomiRs.html
docs/articles/isomiRs_files/figure-html/isonetwork-1.png
docs/articles/isomiRs_files/figure-html/package-de-1.png
docs/articles/isomiRs_files/figure-html/package-norm-1.png
docs/articles/isomiRs_files/figure-html/package-plot-iso-t5-1.png
docs/articles/isomiRs_files/figure-html/package-pls-1.png
docs/articles/isomiRs_files/header-attrs-2.6/header-attrs.js
docs/articles/isomirs.bib
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/IsomirDataSeq.html
docs/reference/IsomirDataSeqFromFiles.html
docs/reference/IsomirDataSeqFromMirtop.html
docs/reference/IsomirDataSeqFromRawData.html
docs/reference/LQNO.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/counts.html
docs/reference/dat286.long.html
docs/reference/design.html
docs/reference/ego.html
docs/reference/findTargets.html
docs/reference/find_targets.html
docs/reference/gene_ex_rse.html
docs/reference/index.html
docs/reference/isoAnnotate.html
docs/reference/isoCorrect-1.png
docs/reference/isoCorrect-2.png
docs/reference/isoCorrect-3.png
docs/reference/isoCorrect-4.png
docs/reference/isoCorrect.html
docs/reference/isoCounts.html
docs/reference/isoDE.html
docs/reference/isoLQNO.html
docs/reference/isoNetwork-1.png
docs/reference/isoNetwork-2.png
docs/reference/isoNetwork-3.png
docs/reference/isoNetwork-4.png
docs/reference/isoNetwork-5.png
docs/reference/isoNetwork-6.png
docs/reference/isoNetwork.html
docs/reference/isoNorm.html
docs/reference/isoPLSDA.html
docs/reference/isoPLSDAplot-1.png
docs/reference/isoPLSDAplot-2.png
docs/reference/isoPLSDAplot-3.png
docs/reference/isoPLSDAplot-4.png
docs/reference/isoPLSDAplot.html
docs/reference/isoPlot-1.png
docs/reference/isoPlot-2.png
docs/reference/isoPlot-3.png
docs/reference/isoPlot-4.png
docs/reference/isoPlot-5.png
docs/reference/isoPlot.html
docs/reference/isoPlotNet.html
docs/reference/isoPlotPosition-1.png
docs/reference/isoPlotPosition-2.png
docs/reference/isoPlotPosition-3.png
docs/reference/isoPlotPosition-4.png
docs/reference/isoPlotPosition-5.png
docs/reference/isoPlotPosition.html
docs/reference/isoSelect.html
docs/reference/isoTop-1.png
docs/reference/isoTop-2.png
docs/reference/isoTop-3.png
docs/reference/isoTop-4.png
docs/reference/isoTop-5.png
docs/reference/isoTop.html
docs/reference/isomiRs-deprecated.html
docs/reference/isomiRs-package.html
docs/reference/ma_ex.html
docs/reference/mirData.html
docs/reference/mirTritation.html
docs/reference/mirna2targetscan.html
docs/reference/mirna_ex_rse.html
docs/reference/updateIsomirDataSeq.html
inst/extra/mirtop/mirtop_rawData.tsv
inst/extra/run/hairpin.fa
inst/extra/run/mirbase.gff3
inst/extra/run/mirtop/log/run.log
inst/extra/run/mirtop/log/trace.log
inst/extra/run/mirtop/mirtop.gff
inst/extra/run/mirtop/sample1.gff
inst/extra/run/mirtop/sample2.gff
inst/extra/sample1.mirna
inst/extra/sample2.mirna
inst/raw-data.R
inst/stickers/isomirs.png
inst/stickers/sticker.R
man/IsomirDataSeq.Rd
man/IsomirDataSeqFromFiles.Rd
man/IsomirDataSeqFromMirtop.Rd
man/IsomirDataSeqFromRawData.Rd
man/counts.Rd
man/dat286.long.Rd
man/design.Rd
man/ego.Rd
man/findTargets.Rd
man/gene_ex_rse.Rd
man/isoAnnotate.Rd
man/isoCounts.Rd
man/isoDE.Rd
man/isoNetwork.Rd
man/isoNorm.Rd
man/isoPlot.Rd
man/isoPlotNet.Rd
man/isoPlotPosition.Rd
man/isoSelect.Rd
man/isoTop.Rd
man/isomiRs-package.Rd
man/ma_ex.Rd
man/mirData.Rd
man/mirTritation.Rd
man/mirna2targetscan.Rd
man/mirna_ex_rse.Rd
man/updateIsomirDataSeq.Rd
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test_basic.R
tests/testthat/test_calculus.R
vignettes/isomiRs.Rmd
vignettes/isomirs.bib
