mirna2targetscan: Find targets in targetscan database
In lpantano/isomiRs: Analyze isomiRs and miRNAs from small RNA-seq
mirna2targetscan R Documentation
Find targets in targetscan database
Description
From a list of miRNA names, find their targets
in targetscan.Hs.eg.db annotation package.
Usage
mirna2targetscan(mirna, species = "hsa", org = NULL, keytype = NULL)
Arguments
mirna
Character vector with miRNA names as in
miRBase 21.
species
hsa or mmu supported right now.
org
AnnotationDb obejct. For example:(org.Mm.eg.db)
keytype
Character mentioning the gene id to use.
For example, ENSEMBL.
Value
data.frame with 4 columns:
miRFamily
Seedmatch
PCT
entrezGene
Examples
library(targetscan.Hs.eg.db)
mirna2targetscan(c("hsa-miR-34c-5p"))
lpantano/isomiRs documentation built on Aug. 26, 2024, 3:34 a.m.
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| mirna2targetscan | R Documentation |
Find targets in targetscan database
Description
From a list of miRNA names, find their targets in targetscan.Hs.eg.db annotation package.
Usage
mirna2targetscan(mirna, species = "hsa", org = NULL, keytype = NULL)
Arguments
mirna |
Character vector with miRNA names as in miRBase 21. |
species |
hsa or mmu supported right now. |
org |
|
keytype |
Character mentioning the gene id to use.
For example, |
Value
data.frame with 4 columns:
miRFamily
Seedmatch
PCT
entrezGene
Examples
library(targetscan.Hs.eg.db)
mirna2targetscan(c("hsa-miR-34c-5p"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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