Files in lpantano/isomiRs

Analyze isomiRs and miRNAs from small RNA-seq

.github/.gitignore

.github/workflows/check-bioc.yml

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/AllClasses.R R/AllGenerics.R R/AllMethods.R

R/PLSDA.R

R/data.R R/internal.R R/isomiRs-package.R R/isomiRs.R R/mirData-data.R R/targets.R R/zzz.R README.md

_pkgdown.yml

data/dat286.rda

data/datalist

data/isoExample.rda

data/mirData.rda

data/mirTritation.rda

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/framed.sty

docs/articles/index.html

docs/articles/isomiRs.html

docs/articles/isomiRs_files/figure-html/isonetwork-1.png

docs/articles/isomiRs_files/figure-html/package-de-1.png

docs/articles/isomiRs_files/figure-html/package-norm-1.png

docs/articles/isomiRs_files/figure-html/package-plot-iso-t5-1.png

docs/articles/isomiRs_files/figure-html/package-pls-1.png

docs/articles/isomiRs_files/header-attrs-2.6/header-attrs.js

docs/articles/isomirs.bib

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/IsomirDataSeq.html

docs/reference/IsomirDataSeqFromFiles.html

docs/reference/IsomirDataSeqFromMirtop.html

docs/reference/IsomirDataSeqFromRawData.html

docs/reference/LQNO.html

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/counts.html

docs/reference/dat286.long.html

docs/reference/design.html

docs/reference/ego.html

docs/reference/findTargets.html

docs/reference/find_targets.html

docs/reference/gene_ex_rse.html

docs/reference/index.html

docs/reference/isoAnnotate.html

docs/reference/isoCorrect-1.png

docs/reference/isoCorrect-2.png

docs/reference/isoCorrect-3.png

docs/reference/isoCorrect-4.png

docs/reference/isoCorrect.html

docs/reference/isoCounts.html

docs/reference/isoDE.html

docs/reference/isoLQNO.html

docs/reference/isoNetwork-1.png

docs/reference/isoNetwork-2.png

docs/reference/isoNetwork-3.png

docs/reference/isoNetwork-4.png

docs/reference/isoNetwork-5.png

docs/reference/isoNetwork-6.png

docs/reference/isoNetwork.html

docs/reference/isoNorm.html

docs/reference/isoPLSDA.html

docs/reference/isoPLSDAplot-1.png

docs/reference/isoPLSDAplot-2.png

docs/reference/isoPLSDAplot-3.png

docs/reference/isoPLSDAplot-4.png

docs/reference/isoPLSDAplot.html

docs/reference/isoPlot-1.png

docs/reference/isoPlot-2.png

docs/reference/isoPlot-3.png

docs/reference/isoPlot-4.png

docs/reference/isoPlot-5.png

docs/reference/isoPlot.html

docs/reference/isoPlotNet.html

docs/reference/isoPlotPosition-1.png

docs/reference/isoPlotPosition-2.png

docs/reference/isoPlotPosition-3.png

docs/reference/isoPlotPosition-4.png

docs/reference/isoPlotPosition-5.png

docs/reference/isoPlotPosition.html

docs/reference/isoSelect.html

docs/reference/isoTop-1.png

docs/reference/isoTop-2.png

docs/reference/isoTop-3.png

docs/reference/isoTop-4.png

docs/reference/isoTop-5.png

docs/reference/isoTop.html

docs/reference/isomiRs-deprecated.html

docs/reference/isomiRs-package.html

docs/reference/ma_ex.html

docs/reference/mirData.html

docs/reference/mirTritation.html

docs/reference/mirna2targetscan.html

docs/reference/mirna_ex_rse.html

docs/reference/updateIsomirDataSeq.html

inst/extra/mirtop/mirtop_rawData.tsv

inst/extra/run/hairpin.fa

inst/extra/run/mirbase.gff3

inst/extra/run/mirtop/log/run.log

inst/extra/run/mirtop/log/trace.log

inst/extra/run/mirtop/mirtop.gff

inst/extra/run/mirtop/sample1.gff

inst/extra/run/mirtop/sample2.gff

inst/extra/sample1.mirna

inst/extra/sample2.mirna

inst/raw-data.R

inst/stickers/isomirs.png

inst/stickers/sticker.R man/IsomirDataSeq.Rd man/IsomirDataSeqFromFiles.Rd man/IsomirDataSeqFromMirtop.Rd man/IsomirDataSeqFromRawData.Rd man/counts.Rd man/dat286.long.Rd man/design.Rd man/ego.Rd man/findTargets.Rd man/gene_ex_rse.Rd man/isoAnnotate.Rd man/isoCounts.Rd man/isoDE.Rd man/isoNetwork.Rd man/isoNorm.Rd man/isoPlot.Rd man/isoPlotNet.Rd man/isoPlotPosition.Rd man/isoSelect.Rd man/isoTop.Rd man/isomiRs-package.Rd man/ma_ex.Rd man/mirData.Rd man/mirTritation.Rd man/mirna2targetscan.Rd man/mirna_ex_rse.Rd man/updateIsomirDataSeq.Rd tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/test_basic.R tests/testthat/test_calculus.R vignettes/isomiRs.Rmd

vignettes/isomirs.bib

lpantano/isomiRs documentation built on May 4, 2024, 6:50 p.m.