Man pages for lpantano/isomiRs
Analyze isomiRs and miRNAs from small RNA-seq

countsAccessors for the count matrix of a IsomirDataSeq object.
dat286.longData frame containing mirna from Argyropoulos's paper
designAccessors for the 'design' slot of a IsomirDataSeq object.
findTargetsFind miRNAs target using mRNA/miRNA expression
gene_ex_rseData frame containing gene expression data
isoCorrectCorrect miRNA expression based on prior ligation bias...
isoCountsCreate count matrix with different summarizing options
isoDEDifferential expression analysis with DESeq2
isoLQNODifferential expression between two groups using LQNO model
IsomirDataSeqClass that contains all isomiRs annotation for all samples
IsomirDataSeqFromFiles'IsomirDataSeqFromFiles' loads miRNA annotation from...
isoNetworkClustering miRNAs-genes pairs in similar pattern expression
isoNormNormalize count matrix
isoPlotPlot the amount of isomiRs in different samples
isoPlotNetFunctional miRNA / gene expression profile plot
isoPlotPositionPlot nucleotides changes at a given position
isoPLSDAPartial Least Squares Discriminant Analysis for...
isoPLSDAplotPlot components from isoPLSDA analysis (pairs plot)
isoSelectMethod to select specific miRNAs from an IsomirDataSeq...
isoTopHeatmap of the top expressed isomiRs
LQNOLQNO distribution
ma_exData frame containing gene-mirna relationship
mirDataExample of IsomirDataSeq with human brain miRNA counts data
mirna_ex_rseData frame containing mirna expression data
mirTritationData frame containing mirna from Argyropoulos's paper
lpantano/isomiRs documentation built on Dec. 7, 2017, 5:44 a.m.