isoTop: Heatmap of the top expressed isomiRs
In lpantano/isomiRs: Analyze isomiRs and miRNAs from small RNA-seq
isoTop R Documentation
Heatmap of the top expressed isomiRs
Description
This function creates a heatmap with the top N
isomiRs/miRNAs. It uses the matrix under counts(ids)
to get the top expressed isomiRs/miRNAs using the average
expression value
and plot a heatmap with the raw counts for each sample.
Usage
isoTop(ids, top = 20, condition = NULL)
Arguments
ids
Object of class IsomirDataSeq.
top
Number of isomiRs/miRNAs used.
condition
Give condition to color PCA samples
Value
PCA of the top expressed miRNAs
Examples
data(mirData)
isoTop(mirData)
lpantano/isomiRs documentation built on May 4, 2024, 6:50 p.m.
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| isoTop | R Documentation |
Heatmap of the top expressed isomiRs
Description
This function creates a heatmap with the top N
isomiRs/miRNAs. It uses the matrix under counts(ids)
to get the top expressed isomiRs/miRNAs using the average
expression value
and plot a heatmap with the raw counts for each sample.
Usage
isoTop(ids, top = 20, condition = NULL)
Arguments
ids |
Object of class IsomirDataSeq. |
top |
Number of isomiRs/miRNAs used. |
condition |
Give condition to color PCA samples |
Value
PCA of the top expressed miRNAs
Examples
data(mirData)
isoTop(mirData)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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