isoPlotPosition: Plot nucleotides changes at a given position

In lpantano/isomiRs: Analyze isomiRs and miRNAs from small RNA-seq

Plot nucleotides changes at a given position

Description

This function plot different isomiRs proportion for each sample at a given position focused on the nucleotide change that happens there.

Usage

isoPlotPosition(ids, position = 1L, column = NULL)

Arguments

ids	Object of class IsomirDataSeq.
position	Integer indicating the position to show.
column	String indicating the column in colData to color samples.

Details

It shows the nucleotides changes at the given position for each sample in each group. The color indicates the sample group. The size of the point is proportional to the number of total counts of isomiRs with changes. The position at y is the % of different isomiRs supporting the change. Note the position is relatively to the sequence not the miRNA.

Value

ggplot2::ggplot() Object showing nucleotide changes at a given position.

Examples

data(mirData)
isoPlotPosition(mirData)

lpantano/isomiRs documentation built on March 14, 2024, 7:19 a.m.