plot method for drFit object
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | plot(x, y, ...)
## S4 method for signature 'drFit'
plot(
x,
pchs = c(16, 17, 15),
cols = c(1, 2, 3),
col = 4,
lwd = 2,
lty = 1,
addLegend = FALSE,
xlab = "Dose",
ylab = "Relative viability",
xlim = NA,
ylim = NA,
main,
type = c("line", "points", "control", "legend", "sem"),
style = "",
bty = "n",
h = c(0.5),
cex.main = 1,
cex.axis = 1,
cex.lab = 1,
axes = TRUE,
return = FALSE
)
|
x |
a drFit object. |
y |
y is not required in a drFit object. |
... |
Arguments to be passed to methods, such as graphical parameters (see par). |
pchs |
pchs (a vector) specify symbols to show different data points. In particular, pchs[1] is used to show regular points. pchs[2] is used to show outliers at 0.05 significance level and pchs[3] is used to show outliers at 0.01 significance level. |
cols |
Similarly, cols[1] is used to color regular points, cols[2] to color outliers at 0.05 significance level and cols[3] to color outliers at 0.01 significance level. |
col |
color used to specify the appearance of fitted curve. |
lwd |
line width used to specify the appearance of fitted curve. |
lty |
line type used to specify the appearance of fitted curve. |
addLegend |
currently deprecated. Please specify through type argument. Whether to add legend indicating outlier status. |
xlab |
x axis label. |
ylab |
y axis label. |
xlim |
y limit for display. |
ylim |
x limit for display. |
main |
main title. |
type |
the plot type. The user can specify more flexibly by specifying a vector of entities to plot including: line: dose response curve points: observed data points control: control data points legend: legend for outlier status |
style |
deprecated. Please specify through type argument. when style='full', observed dose-response pairs are plotted including controls, fitted curve is superimposed and legend for outliers indicated; when style='simple', only fitted curve is plotted (without dose-response points and of course, not outlier status). |
bty |
bty passed to legend. |
h |
horizontal line to add indicating e.g. IC50 (h=0.5). |
cex.main |
cex for main title. |
cex.axis |
cex for axis annotation. |
cex.lab |
cex for axis label. |
axes |
whether to add axes. |
return |
whether return data for the plotted lines; this is useful if we want to reconstruct the lines elsewhere. |
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