RefineVariableGenes: Update the '@var.genes' slot of a Seurat object using cluster...
In maehrlab/thymusatlastools: Tools for analysis of single-cell transcriptomic data
Description
Usage
Arguments
Value
View source: R/exploratory_pipeline.R
Description
Update the '@var.genes' slot of a Seurat object using cluster markers.
Usage
1
RefineVariableGenes(dge, log_fc = 1, eligible_genes = NULL)
Arguments
dge
Seurat object
log_fc
For each gene, we compute the difference between the highest and lowest cluster mean.
If it exceeds this, the gene is included in the active set.
eligible_genes
dge@var.genes get intersected with this list before return.
Value
A Seurat object.
maehrlab/thymusatlastools documentation built on May 28, 2019, 2:32 a.m.
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Description Usage Arguments Value
View source: R/exploratory_pipeline.R
Description
Update the '@var.genes' slot of a Seurat object using cluster markers.
Usage
1 | RefineVariableGenes(dge, log_fc = 1, eligible_genes = NULL)
|
Arguments
dge |
Seurat object |
log_fc |
For each gene, we compute the difference between the highest and lowest cluster mean. If it exceeds this, the gene is included in the active set. |
eligible_genes |
dge@var.genes get intersected with this list before return. |
Value
A Seurat object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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