remove_species_specific_genes: Remove species-specific genes from a Seurat object.
In maehrlab/thymusatlastools: Tools for analysis of single-cell transcriptomic data
Description
Remove species-specific genes from a Seurat object.
Usage
1
2
remove_species_specific_genes(dge, results_path, threshold = 0.003,
diff_thresh = 0.5)
Details
The input is a Seurat object with a metadata field "species".
Removes genes that appear in less than 3 out of 1000 cells of any species
Also removes genes where the proportion in one species is higher by 0.5 than the other.
maehrlab/thymusatlastools documentation built on May 28, 2019, 2:32 a.m.
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Description
Remove species-specific genes from a Seurat object.
Usage
1 2 | remove_species_specific_genes(dge, results_path, threshold = 0.003,
diff_thresh = 0.5)
|
Details
The input is a Seurat object with a metadata field "species". Removes genes that appear in less than 3 out of 1000 cells of any species Also removes genes where the proportion in one species is higher by 0.5 than the other.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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