save_feature_plots: Save plots en masse.
In maehrlab/thymusatlastools: Tools for analysis of single-cell transcriptomic data

Save plots en masse.

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save_feature_plots(dge, results_path, top_genes = NULL, by_cluster = NULL,
  gene_list = NULL, gene_list_name = NULL, axes = NULL,
  axes_description = NULL, do_time_series = F, alpha = 1, ...)

`dge`	Seurat object with available t-SNE coords (or whatever's in 'axes')
`alpha`	Transparency of points
`...`	Additional parameters are passed to 'custom_feature_plot' or 'time_series'
`results_path:`	where to save the resulting plots
`top_genes:`	deprecated; do not use
`by_cluster:`	deprecated; do not use
`gene_list:`	character vector consisting of gene names
`gene_list_name:`	used in file paths so that you can call this function again with different 'gene_list_name'
`axes:`	any pair of numeric variables retrievable via FetchData. Defaults to 'c("tSNE_1", "tSNE_2")'.
`axes_description:`	used in file paths so that you can call this function again with different ‘axes_description' but the same 'results_path' and it won’t overwrite.
`time_series:`	Uses 'time_series' internally instead of 'custom_feature_plot'. Changes defaults for 'axes' and 'axes_description'.