Files in markgene/yamatCN

Yet Another Methylation Array Toolkit Copy Number Analysis

R/DNAcopy.R R/conumee-annotation.R R/conumee-pipe-tune.R R/conumee-pipe.R R/cwob-pipe.R R/methylcnv-pipe.R R/pipe-classes.R R/pipe.R R/plot.R R/preprocess.R R/report.R R/save.R R/utils.R R/write-segments.R README.md inst/extdata/cnv-report-template-pdf.Rmd inst/extdata/cnv-report-template.Rmd man/CNV.create_anno.yamat.Rd man/CNV.create_anno2.Rd man/ConumeePipe-class.Rd man/CwobPipe-class.Rd man/MethylCNVPipe-class.Rd man/Pipe-class.Rd man/cal_log2_ratio.Rd man/conumee_analysis.Rd man/conumee_backbone.Rd man/conumee_pipe.Rd man/create_dnacopy_cna.Rd man/cwob_pipe.Rd man/detail_regions.Rd man/dnacopy_analysis.Rd man/dnacopy_analysis.conumee.Rd man/dnacopy_analysis.default.Rd man/dnacopy_analysis.yamat.Rd man/get_influential_loci.Rd man/methylcnv_pipe.Rd man/preprocess.Rd man/report_pipe.Rd man/save_pipe.Rd man/summarize_dnacopy_segments.Rd man/tune_conumee_pipe.Rd man/write_segments.Rd tests/testthat.R tests/testthat/test_DNAcopy.R tests/testthat/test_conumee-annotation.R tests/testthat/test_conumee-pipe-tune.R tests/testthat/test_conumee-pipe.R tests/testthat/test_cwob-pipe.R tests/testthat/test_methylcnv-pipe.R tests/testthat/test_utils.R