AddInfo2res: AddInfo2res
In mbertalan/iPsychCNV: iPsychCNV
Description
Usage
Arguments
Details
Value
Author(s)
Source
Examples
Description
AddInfo2res: Function to add variables for each CNV region. Function is used at FilterCNVs.V4.R.
Usage
1
2
AddInfo2res(res, CNV2HighPvalue, CNV2LowPvalue, Class, BAlleleFreq, MyBAF,
LogRRatio, SumPeaks, SDChr, MeanChr)
Arguments
Res:cbind
of two data frames. 1-) GetDataVariables. 2-) ClassNumbers.
CNV2HighPvalue:
P value of t.test among CNV region and its upstream region.
CNV2LowPvalue:
P value of t.test among CNV region and its downstream region.
Class:
Result from DefineBAFType function.
BAlleleFreq:
Result from DefineBAFType function.
MyBAF:
Result from EvaluateMyBAF function.
LogRRatio:
Result from DefiningLogRRatio function.
SumPeaks:
Result from CleaningPeaks function.
SDChr:
Log R Ratio (LRR) standard deviation from whole chromosome.
MeanChr:
Log R Ratio (LRR) mean from whole chromosome.
Details
Specifically designed to reduce false positive CNVs and amplified DNA on dried blood spots.
Value
Return all variables together in a data frame.
Author(s)
Marcelo Bertalan, Louise K. Hoeffding.
Source
Examples
1
res4 <- AddInfo2res(res3, CNV2HighPvalue, CNV2LowPvalue, Class, BAlleleFreq, MyBAF, LogRRatio, SumPeaks, SDChr, MeanChr)
mbertalan/iPsychCNV documentation built on May 22, 2019, 12:19 p.m.
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Description Usage Arguments Details Value Author(s) Source Examples
Description
AddInfo2res: Function to add variables for each CNV region. Function is used at FilterCNVs.V4.R.
Usage
1 2 | AddInfo2res(res, CNV2HighPvalue, CNV2LowPvalue, Class, BAlleleFreq, MyBAF,
LogRRatio, SumPeaks, SDChr, MeanChr)
|
Arguments
Res:cbind |
of two data frames. 1-) GetDataVariables. 2-) ClassNumbers. |
CNV2HighPvalue: |
P value of t.test among CNV region and its upstream region. |
CNV2LowPvalue: |
P value of t.test among CNV region and its downstream region. |
Class: |
Result from DefineBAFType function. |
BAlleleFreq: |
Result from DefineBAFType function. |
MyBAF: |
Result from EvaluateMyBAF function. |
LogRRatio: |
Result from DefiningLogRRatio function. |
SumPeaks: |
Result from CleaningPeaks function. |
SDChr: |
Log R Ratio (LRR) standard deviation from whole chromosome. |
MeanChr: |
Log R Ratio (LRR) mean from whole chromosome. |
Details
Specifically designed to reduce false positive CNVs and amplified DNA on dried blood spots.
Value
Return all variables together in a data frame.
Author(s)
Marcelo Bertalan, Louise K. Hoeffding.
Source
Examples
1 | res4 <- AddInfo2res(res3, CNV2HighPvalue, CNV2LowPvalue, Class, BAlleleFreq, MyBAF, LogRRatio, SumPeaks, SDChr, MeanChr)
|
R Package Documentation
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