GetLocus: GetLocus
In mbertalan/iPsychCNV: iPsychCNV
Description
Usage
Arguments
Details
Value
Author(s)
Source
Examples
Description
GetLocus: Adds locus to dataframe based on UCSC cytobands.
Usage
1
Arguments
df:
Data frame (with predicted CNVs for each sample) with at least Chr, Start, Stop.
hg:
Human genome version, default = hg19. For full range of possibilities, run ucscGenomes()$db rtracklayer
Url:
If you can access https, default FASLE, only for hg19.
Details
Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Value
data frame with CNV locus.
Author(s)
Marcelo Bertalan, Louise K. Hoeffding.
Source
Examples
1
GetLocus(CNVs, hg="hg18")
mbertalan/iPsychCNV documentation built on May 22, 2019, 12:19 p.m.
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Description Usage Arguments Details Value Author(s) Source Examples
Description
GetLocus: Adds locus to dataframe based on UCSC cytobands.
Usage
1 |
Arguments
df: |
Data frame (with predicted CNVs for each sample) with at least Chr, Start, Stop. |
hg: |
Human genome version, default = hg19. For full range of possibilities, run ucscGenomes()$db rtracklayer |
Url: |
If you can access https, default FASLE, only for hg19. |
Details
Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Value
data frame with CNV locus.
Author(s)
Marcelo Bertalan, Louise K. Hoeffding.
Source
Examples
1 | GetLocus(CNVs, hg="hg18")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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