Files in mbertalan/iPsychCNV
iPsychCNV
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
Perl/Penn2Tab.pl
R/AddNoCNVRegions.R
R/Affy_convert.R
R/BAF_drift.R
R/BindMultipleFiles.R
R/Char2Num.R
R/CheckAbnChr.R
R/ClassNumbers.R
R/ClassNumbersV2.R
R/CleaningPeaks.R
R/CompressCNVs.R
R/ConvertPenntoRCNVs.R
R/DataFrame2Matrix.R
R/DefineBAFType.R
R/DefineCNVClass.R
R/DefineCNVType.R
R/DefineStartAndStop.R
R/DefiningLogRRatio.R
R/EvaluateMockResults.R
R/EvaluateMyBAF.R
R/FilterCNVs.V4.R
R/FilterCNVs.V5.R
R/FilterFromCNVs.R
R/FindCNV.V4.R
R/FindHighFreqCNVs.R
R/GetCNVClass.R
R/GetCNVFreq.R
R/GetDataVariables.R
R/GetGenotypeInfo.R
R/GetHeterozygosity.R
R/GetIndxPositionFromChips.R
R/GetLocus.R
R/GetMinCNVs.R
R/GetMockValues.R
R/HotspotsCNV.R
R/HotspotsPrediction.R
R/MakeAndEvalMockData.R
R/MakeBAF.R
R/MakeLongMockSample.R
R/MakeOneMockSample.R
R/MatrixOrList2df.R
R/MergeCNVs.R
R/MockData.R
R/MultiPlotsManySamples.R
R/MultipleMockData.R
R/Multiplot.R
R/NormalizeData.R
R/PeaksAndPits.R
R/PlotAllCNVs.R
R/PlotCNVs.R
R/PlotCNVsFromDataFrame.R
R/PlotHotspots.R
R/PlotLRRAndCNVs.R
R/PlotXandYChr.R
R/PlotXandYChrV2.R
R/QC_plots.R
R/QualityControl.R
R/ReScanCNVs.R
R/ReadSample.R
R/RemoveCentromere.R
R/RunGada.R
R/RunLongMock.R
R/RunPennCNV.R
R/RunSingleMock.R
R/SelectSamplesFromROI.R
R/SlidingWindowMean.R
R/StackPlot.R
R/VerifyPos.R
R/format_si.R
R/iPsychCNV.R
README.md
data/BloodDBSCNVs.RData
data/CNV.Res.RData
data/CNVSizeFixed.RData
data/Cent.RData
data/Chip_Info.RData
data/ChrMeanProb_Blood_800_Density.RData
data/ChrMeanProb_PKU_Wave10_Density.RData
data/ChrMean_Blood_800_Density.RData
data/ChrMean_PKU_Wave10_Density.RData
data/CytoBands.RData
data/CytoBands2.RData
data/DCCR.hotspots.hg19.RData
data/DCCR.hotspots.hg20.RData
data/ExmSNPByChr.RData
data/GC_MeanByChr.RData
data/HMM.LRR.fit.RData
data/LCR.SNPs.RData
data/Pilot8ROI.RData
data/Psychiatric.CNVs.Ext.RData
data/PsychiatricCNVsFreq.RData
data/RoiSingleMock.RData
data/SNPs.GC.RData
data/SelectedHotspots.RData
data/SelectedHotspots.hg20.RData
data/Wave1PFB.RData
data/hotspot.hg18.RData
data/hotspot.hg19.RData
data/roi.RData
data/roi_hg18.RData
data/roi_hg19.RData
data/roiext.RData
data/roiext2.RData
data/svm.model.iPsychCNV.RData
data/trainset.RData
exec/Penn2Tab.pl
figures/figures.md
iPsychCNV.Rproj
man/AddInfo2res.Rd
man/BAF_drift.Rd
man/BindMultipleFiles.Rd
man/CheckAbnChr.Rd
man/ClassNumbers.Rd
man/CleaningPeaks.Rd
man/CompressCNVs.Rd
man/ConvertPenntoRCNVs.Rd
man/DataFrame2Matrix.Rd
man/DefineBAFType.Rd
man/DefineCNVClass.Rd
man/DefineCNVType.Rd
man/DefineStartAndStop.Rd
man/DefiningLogRRatio.Rd
man/EvaluateMockResults.Rd
man/EvaluateMyBAF.Rd
man/FilterCNVs.V4.Rd
man/FilterFromCNVs.Rd
man/FindCNV.V4.Rd
man/FindHighFreqCNVs.Rd
man/GetCNVClass.Rd
man/GetCNVFreq.Rd
man/GetDataVariables.Rd
man/GetGenotypeInfo.Rd
man/GetIndxPositionFromChips.Rd
man/GetLocus.Rd
man/GetMockValues.Rd
man/HotspotsCNV.Rd
man/HotspotsPrediction.Rd
man/MakeAndEvalMockData.Rd
man/MakeLongMockSample.Rd
man/MakeOneMockSample.Rd
man/MatrixOrList2df.Rd
man/MergeCNVs.Rd
man/MockData.Rd
man/MultiPlotsManySamples.Rd
man/MultipleMockData.Rd
man/Multiplot.Rd
man/NormalizeData.Rd
man/PeaksAndPits.Rd
man/PlotAllCNVs.Rd
man/PlotCNVs.Rd
man/PlotCNVsFromDataFrame.Rd
man/PlotHotspots.Rd
man/PlotLRRAndCNVs.Rd
man/PlotXandYChr.Rd
man/QC_Plots.Rd
man/QualityControl.Rd
man/ReScanCNVs.Rd
man/ReadSample.Rd
man/RemoveCentromere.Rd
man/RunGada.Rd
man/RunLongMock.Rd
man/RunPennCNV.Rd
man/RunSingleMock.Rd
man/SelectSamplesFromROI.Rd
man/SlideWindowMean.Rd
man/StackPlot.Rd
man/VerifyPos.Rd
man/affyConvert.Rd
man/format_si.Rd
man/iPsychCNV.Rd
