Files in mbertalan/iPsychCNV
iPsychCNV

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
Perl/Penn2Tab.pl
R/AddNoCNVRegions.R R/Affy_convert.R R/BAF_drift.R R/BindMultipleFiles.R R/Char2Num.R R/CheckAbnChr.R R/ClassNumbers.R R/ClassNumbersV2.R R/CleaningPeaks.R R/CompressCNVs.R R/ConvertPenntoRCNVs.R R/DataFrame2Matrix.R R/DefineBAFType.R R/DefineCNVClass.R R/DefineCNVType.R R/DefineStartAndStop.R R/DefiningLogRRatio.R R/EvaluateMockResults.R R/EvaluateMyBAF.R R/FilterCNVs.V4.R R/FilterCNVs.V5.R R/FilterFromCNVs.R R/FindCNV.V4.R R/FindHighFreqCNVs.R R/GetCNVClass.R R/GetCNVFreq.R R/GetDataVariables.R R/GetGenotypeInfo.R R/GetHeterozygosity.R R/GetIndxPositionFromChips.R R/GetLocus.R R/GetMinCNVs.R R/GetMockValues.R R/HotspotsCNV.R R/HotspotsPrediction.R R/MakeAndEvalMockData.R R/MakeBAF.R R/MakeLongMockSample.R R/MakeOneMockSample.R R/MatrixOrList2df.R R/MergeCNVs.R R/MockData.R R/MultiPlotsManySamples.R R/MultipleMockData.R R/Multiplot.R R/NormalizeData.R R/PeaksAndPits.R R/PlotAllCNVs.R R/PlotCNVs.R R/PlotCNVsFromDataFrame.R R/PlotHotspots.R R/PlotLRRAndCNVs.R R/PlotXandYChr.R R/PlotXandYChrV2.R R/QC_plots.R R/QualityControl.R R/ReScanCNVs.R R/ReadSample.R R/RemoveCentromere.R R/RunGada.R R/RunLongMock.R R/RunPennCNV.R R/RunSingleMock.R R/SelectSamplesFromROI.R R/SlidingWindowMean.R R/StackPlot.R R/VerifyPos.R R/format_si.R R/iPsychCNV.R README.md
data/BloodDBSCNVs.RData
data/CNV.Res.RData
data/CNVSizeFixed.RData
data/Cent.RData
data/Chip_Info.RData
data/ChrMeanProb_Blood_800_Density.RData
data/ChrMeanProb_PKU_Wave10_Density.RData
data/ChrMean_Blood_800_Density.RData
data/ChrMean_PKU_Wave10_Density.RData
data/CytoBands.RData
data/CytoBands2.RData
data/DCCR.hotspots.hg19.RData
data/DCCR.hotspots.hg20.RData
data/ExmSNPByChr.RData
data/GC_MeanByChr.RData
data/HMM.LRR.fit.RData
data/LCR.SNPs.RData
data/Pilot8ROI.RData
data/Psychiatric.CNVs.Ext.RData
data/PsychiatricCNVsFreq.RData
data/RoiSingleMock.RData
data/SNPs.GC.RData
data/SelectedHotspots.RData
data/SelectedHotspots.hg20.RData
data/Wave1PFB.RData
data/hotspot.hg18.RData
data/hotspot.hg19.RData
data/roi.RData
data/roi_hg18.RData
data/roi_hg19.RData
data/roiext.RData
data/roiext2.RData
data/svm.model.iPsychCNV.RData
data/trainset.RData
exec/Penn2Tab.pl
figures/figures.md
iPsychCNV.Rproj
man/AddInfo2res.Rd man/BAF_drift.Rd man/BindMultipleFiles.Rd man/CheckAbnChr.Rd man/ClassNumbers.Rd man/CleaningPeaks.Rd man/CompressCNVs.Rd man/ConvertPenntoRCNVs.Rd man/DataFrame2Matrix.Rd man/DefineBAFType.Rd man/DefineCNVClass.Rd man/DefineCNVType.Rd man/DefineStartAndStop.Rd man/DefiningLogRRatio.Rd man/EvaluateMockResults.Rd man/EvaluateMyBAF.Rd man/FilterCNVs.V4.Rd man/FilterFromCNVs.Rd man/FindCNV.V4.Rd man/FindHighFreqCNVs.Rd man/GetCNVClass.Rd man/GetCNVFreq.Rd man/GetDataVariables.Rd man/GetGenotypeInfo.Rd man/GetIndxPositionFromChips.Rd man/GetLocus.Rd man/GetMockValues.Rd man/HotspotsCNV.Rd man/HotspotsPrediction.Rd man/MakeAndEvalMockData.Rd man/MakeLongMockSample.Rd man/MakeOneMockSample.Rd man/MatrixOrList2df.Rd man/MergeCNVs.Rd man/MockData.Rd man/MultiPlotsManySamples.Rd man/MultipleMockData.Rd man/Multiplot.Rd man/NormalizeData.Rd man/PeaksAndPits.Rd man/PlotAllCNVs.Rd man/PlotCNVs.Rd man/PlotCNVsFromDataFrame.Rd man/PlotHotspots.Rd man/PlotLRRAndCNVs.Rd man/PlotXandYChr.Rd man/QC_Plots.Rd man/QualityControl.Rd man/ReScanCNVs.Rd man/ReadSample.Rd man/RemoveCentromere.Rd man/RunGada.Rd man/RunLongMock.Rd man/RunPennCNV.Rd man/RunSingleMock.Rd man/SelectSamplesFromROI.Rd man/SlideWindowMean.Rd man/StackPlot.Rd man/VerifyPos.Rd man/affyConvert.Rd man/format_si.Rd man/iPsychCNV.Rd
mbertalan/iPsychCNV documentation built on June 30, 2017, 2:02 a.m.