RunLongMock: RunSingleMock

In mbertalan/iPsychCNV: iPsychCNV

Description

RunLongMock: Run a single mock sample.

Usage

RunLongMock(Name = "Test", Method = "PennCNV", CNVDistance = 1000,
  Type = c(0, 1, 2, 3, 4), Mean = c(-0.3, -0.6, 0.3, 0.6), Size = c(300,
  600),
  HMM = "/media/NeoScreen/NeSc_home/share/Programs/penncnv/lib/hhall.hmm",
  Path2PennCNV = "/media/NeoScreen/NeSc_home/share/Programs/penncnv/")

Arguments

Name:	Unknown.
Method:	The Copy Number Variation (CNV) calling algorithm, default = PennCNV.
CNVDistance:	Distance between CNVs, default = 1000.
Type:	Unknown, default = Unknown.
Mean:	Unknown, default = Unknown.
Size:	Unknown, default = Unknown.
HMM:	Unknown, default = Unknown.
Path2PennCNV:	The path to the pennCNV algorithm, Unknown.

Details

Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.

Value

Classification for Log R Ratio (LRR).

Author(s)

Marcelo Bertalan, Louise K. Hoeffding.

Source

http://biopsych.dk/iPsychCNV

Examples

Unknown.

mbertalan/iPsychCNV documentation built on May 22, 2019, 12:19 p.m.