Description Usage Arguments Details Value Author(s) Source Examples
RunLongMock: Run a single mock sample.
1 2 3 4 5 | RunLongMock(Name = "Test", Method = "PennCNV", CNVDistance = 1000,
Type = c(0, 1, 2, 3, 4), Mean = c(-0.3, -0.6, 0.3, 0.6), Size = c(300,
600),
HMM = "/media/NeoScreen/NeSc_home/share/Programs/penncnv/lib/hhall.hmm",
Path2PennCNV = "/media/NeoScreen/NeSc_home/share/Programs/penncnv/")
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Name: |
Unknown. |
Method: |
The Copy Number Variation (CNV) calling algorithm, default = PennCNV. |
CNVDistance: |
Distance between CNVs, default = 1000. |
Type: |
Unknown, default = Unknown. |
Mean: |
Unknown, default = Unknown. |
Size: |
Unknown, default = Unknown. |
HMM: |
Unknown, default = Unknown. |
Path2PennCNV: |
The path to the pennCNV algorithm, Unknown. |
Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Classification for Log R Ratio (LRR).
Marcelo Bertalan, Louise K. Hoeffding.
1 | Unknown.
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