RunLongMock: RunSingleMock

Description Usage Arguments Details Value Author(s) Source Examples

View source: R/RunLongMock.R

Description

RunLongMock: Run a single mock sample.

Usage

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RunLongMock(Name = "Test", Method = "PennCNV", CNVDistance = 1000,
  Type = c(0, 1, 2, 3, 4), Mean = c(-0.3, -0.6, 0.3, 0.6), Size = c(300,
  600),
  HMM = "/media/NeoScreen/NeSc_home/share/Programs/penncnv/lib/hhall.hmm",
  Path2PennCNV = "/media/NeoScreen/NeSc_home/share/Programs/penncnv/")

Arguments

Name:

Unknown.

Method:

The Copy Number Variation (CNV) calling algorithm, default = PennCNV.

CNVDistance:

Distance between CNVs, default = 1000.

Type:

Unknown, default = Unknown.

Mean:

Unknown, default = Unknown.

Size:

Unknown, default = Unknown.

HMM:

Unknown, default = Unknown.

Path2PennCNV:

The path to the pennCNV algorithm, Unknown.

Details

Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.

Value

Classification for Log R Ratio (LRR).

Author(s)

Marcelo Bertalan, Louise K. Hoeffding.

Source

http://biopsych.dk/iPsychCNV

Examples

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Unknown.

mbertalan/iPsychCNV documentation built on June 30, 2017, 2:02 a.m.