GetCNVFreq: GetCNVFreq
In mbertalan/iPsychCNV: iPsychCNV
Description
Usage
Arguments
Details
Value
Author(s)
Source
Examples
Description
GetCNVFreq: Get CNV freq.
Usage
1
GetCNVFreq(df, Pheno, Cut, roi)
Arguments
df
Data frame with CNVs, must have status1 as phenotype variable and ID as sample ID variable.
Pheno
Data frame with phenotypes must have status1 as phenotype variable and ID as sample ID variable.
Cut
Cutoff value for CNV mean. Only negative for now. Default Cuf=-0.3.
roi
Regions of interest, object with information where should be the CNV you are looking for.
Details
Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Value
return data in a data frame.
Author(s)
Marcelo Bertalan.
Source
Examples
1
Unknown.
mbertalan/iPsychCNV documentation built on May 22, 2019, 12:19 p.m.
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Description Usage Arguments Details Value Author(s) Source Examples
Description
GetCNVFreq: Get CNV freq.
Usage
1 | GetCNVFreq(df, Pheno, Cut, roi)
|
Arguments
df |
Data frame with CNVs, must have status1 as phenotype variable and ID as sample ID variable. |
Pheno |
Data frame with phenotypes must have status1 as phenotype variable and ID as sample ID variable. |
Cut |
Cutoff value for CNV mean. Only negative for now. Default Cuf=-0.3. |
roi |
Regions of interest, object with information where should be the CNV you are looking for. |
Details
Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Value
return data in a data frame.
Author(s)
Marcelo Bertalan.
Source
Examples
1 | Unknown.
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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