PlotAllCNVs: PlotAllCNVs

Description Usage Arguments Details Value Author(s) Source Examples

View source: R/PlotAllCNVs.R

Description

PlotAllCNVs: Plot all Copy Number Variations (CNVs) in one plot.

Usage

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PlotAllCNVs(df = CNV.Res, Name = "CNV.Res.Test.png", NCOL = 2,
  Roi = roi, width = 16, height = 30, hg = "hg19", chr = NA,
  start = NA, stop = NA, Order = TRUE)

Arguments

Df:

Data frame with predicted CNVs for each sample, default = CNV.Res.

Name:Unknown,

default = Unknown.

NCOL:

Number of columns, default = 2.

Roi:

Regions of interest or hotspots, default = roi.

Width:

Unknown, defualt = 16.

Height:

Unknown, default = 30.

Hg:

Human genome version, default = hg19.

Chr:

Chromosome, default = NA.

Start:

The start position of each CNV, default = NA.

Stop:

The stop position of each CNV, default = NA.

Order:

Should the function order the CNVs ?, default = TRUE.

Details

Specifically designed to handle noisy data from amplified DNA on Phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.

Value

Return data in a data frame.

Author(s)

Marcelo Bertalan, Louise K. Hoeffding.

Source

http://biopsych.dk/iPsychCNV

Examples

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Unknown.

mbertalan/iPsychCNV documentation built on June 30, 2017, 2:02 a.m.