Description Usage Arguments Details Value Author(s) Source Examples
PlotAllCNVs: Plot all Copy Number Variations (CNVs) in one plot.
1 2 3 |
Df: |
Data frame with predicted CNVs for each sample, default = CNV.Res. |
Name:Unknown, |
default = Unknown. |
NCOL: |
Number of columns, default = 2. |
Roi: |
Regions of interest or hotspots, default = roi. |
Width: |
Unknown, defualt = 16. |
Height: |
Unknown, default = 30. |
Hg: |
Human genome version, default = hg19. |
Chr: |
Chromosome, default = NA. |
Start: |
The start position of each CNV, default = NA. |
Stop: |
The stop position of each CNV, default = NA. |
Order: |
Should the function order the CNVs ?, default = TRUE. |
Specifically designed to handle noisy data from amplified DNA on Phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Return data in a data frame.
Marcelo Bertalan, Louise K. Hoeffding.
1 | Unknown.
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