QualityControl: QualityControl
In mbertalan/iPsychCNV: iPsychCNV
Description
Usage
Arguments
Details
Value
Author(s)
Source
Examples
Description
QualityControl: Unknown.
Usage
1
2
3
QualityControl(PathRawData = "/media/NeoScreen/NeSc_home/ILMN/iPSYCH/",
Cores = 10, Pattern = "*_*assed_*", NumFiles = "All", Skip = 0,
Normalization = FALSE)
Arguments
PathRawData:
The path to the raw data files containing the Log R Ratio (LRR) and B Allele Frequency (BAF) vaules.
Cores:
Number of cores used, default = 10.
Pattern:
File pattern in the raw data, default = "*_*assed_*".
NumFiles:
Number of files to be analyzed from raw data, default = All.
Skip:
Integer, the number of lines of the data file to be skipped before beginning to read the data, default = 0.
Normalization:
Unknown, default = FALSE.
Details
Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Value
Data frame with QC variables.
Author(s)
Marcelo Bertalan, Louise K. Hoeffding.
Source
Examples
1
Unknown.
mbertalan/iPsychCNV documentation built on May 22, 2019, 12:19 p.m.
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Description Usage Arguments Details Value Author(s) Source Examples
Description
QualityControl: Unknown.
Usage
1 2 3 | QualityControl(PathRawData = "/media/NeoScreen/NeSc_home/ILMN/iPSYCH/",
Cores = 10, Pattern = "*_*assed_*", NumFiles = "All", Skip = 0,
Normalization = FALSE)
|
Arguments
PathRawData: |
The path to the raw data files containing the Log R Ratio (LRR) and B Allele Frequency (BAF) vaules. |
Cores: |
Number of cores used, default = 10. |
Pattern: |
File pattern in the raw data, default = "*_*assed_*". |
NumFiles: |
Number of files to be analyzed from raw data, default = All. |
Skip: |
Integer, the number of lines of the data file to be skipped before beginning to read the data, default = 0. |
Normalization: |
Unknown, default = FALSE. |
Details
Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Value
Data frame with QC variables.
Author(s)
Marcelo Bertalan, Louise K. Hoeffding.
Source
Examples
1 | Unknown.
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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