QualityControl: QualityControl

Description Usage Arguments Details Value Author(s) Source Examples

View source: R/QualityControl.R

Description

QualityControl: Unknown.

Usage

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QualityControl(PathRawData = "/media/NeoScreen/NeSc_home/ILMN/iPSYCH/",
  Cores = 10, Pattern = "*_*assed_*", NumFiles = "All", Skip = 0,
  Normalization = FALSE)

Arguments

PathRawData:

The path to the raw data files containing the Log R Ratio (LRR) and B Allele Frequency (BAF) vaules.

Cores:

Number of cores used, default = 10.

Pattern:

File pattern in the raw data, default = "*_*assed_*".

NumFiles:

Number of files to be analyzed from raw data, default = All.

Skip:

Integer, the number of lines of the data file to be skipped before beginning to read the data, default = 0.

Normalization:

Unknown, default = FALSE.

Details

Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.

Value

Data frame with QC variables.

Author(s)

Marcelo Bertalan, Louise K. Hoeffding.

Source

http://biopsych.dk/iPsychCNV

Examples

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Unknown.

mbertalan/iPsychCNV documentation built on June 30, 2017, 2:02 a.m.