SelectSamplesFromROI: SelectSamplesFromROI

Description Usage Arguments Details Value Author(s) Examples

View source: R/SelectSamplesFromROI.R

Description

SelectSamplesFromROI: Select region of interest based on the samples.

Usage

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SelectSamplesFromROI(DF, roi, OverlapMin = 0.8, OverlapMax = 1.2,
  Cores = 1)

Arguments

DF:

Data frame with predicted CNVs for each sample.

Roi:

Regions Of Interest or hotspots.

OverlapMin:

Minimum overlap a CNV need to have with the hotspot to be selected, default = 0.8.

OverlapMax:

Maximum overlap accepted for a CNV and a hotspots, default = 1.2.

Details

Given hotspots regions and overlap cutoff it will return CNVs that belong to each hotspot.

Value

Data frame with predicted CNVs that belong to each hotspot.

Author(s)

Marcelo Bertalan, Louise K. Hoeffding.

Examples

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cnvs <- SelectSamplesFromROI(DF=Hotspots, roi=roi, OverlapMin=0.8, OverlapMax=1.2)

mbertalan/iPsychCNV documentation built on June 30, 2017, 2:02 a.m.