Description Usage Arguments Details Value Author(s) Examples
SelectSamplesFromROI: Select region of interest based on the samples.
1 2 | SelectSamplesFromROI(DF, roi, OverlapMin = 0.8, OverlapMax = 1.2,
Cores = 1)
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DF: |
Data frame with predicted CNVs for each sample. |
Roi: |
Regions Of Interest or hotspots. |
OverlapMin: |
Minimum overlap a CNV need to have with the hotspot to be selected, default = 0.8. |
OverlapMax: |
Maximum overlap accepted for a CNV and a hotspots, default = 1.2. |
Given hotspots regions and overlap cutoff it will return CNVs that belong to each hotspot.
Data frame with predicted CNVs that belong to each hotspot.
Marcelo Bertalan, Louise K. Hoeffding.
1 | cnvs <- SelectSamplesFromROI(DF=Hotspots, roi=roi, OverlapMin=0.8, OverlapMax=1.2)
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