Description Usage Arguments Details Value Author(s) Source Examples
ReadSample: Read data.
1 2 | ReadSample(RawFile = "Test.txt", skip = 0, LCR = FALSE, PFB = NULL,
chr = NA, SNPList = NULL)
|
RawFile: |
The raw data files, default = Test.txt. |
Skip: |
Integer, the number of lines of the data file to skip before beginning to read data, default = 0. |
LCR: |
List low copy repeat regions, list of SNPs that should be removed, default = FALSE. |
PFB: |
Vector, population frequency 0 to 1 for each SNP in the array, default = NULL. |
Chr: |
Character, select a specific chromosome to be analyzed, default = NA. |
SNPList: |
Getting Chr. and Position from another source than the RawFile - input should be the full path of the SNPList with columns: Name, Chr, amd Position. Any positions from the RawFile will be erased. A PFB-column is also allowed but will be overwritten by the PFB-parameter or exchanged with 0.5 |
Specifically designed to handle noisy data from amplified DNA on phenylketonuria (PKU) cards. The function is a pipeline using many subfunctions.
Return data in a data frame.
Marcelo Bertalan, Louise K. Hoeffding.
1 | Unknown.
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