BNPR_samp_only: Nonparametric estimate of sampling intensity
In mdkarcher/phylodyn: Statistical Tools for Phylodynamics
Description
Nonparametric estimate of sampling intensity
Usage
1
2
BNPR_samp_only(data, lengthout = 100, grid = NULL, tmrca = NULL,
prec_alpha = 0.01, prec_beta = 0.01)
Arguments
data
phylo object or list containing vectors of sampling times
samp_times and number sampled per sampling time n_sampled.
lengthout
numeric specifying number of grid points.
grid
numeric vector of endpoints of the latent field.
tmrca
numeric optional value to specify end of grid. Useful for having
the same grid as a coalescent inference.
prec_alpha, prec_beta
numerics specifying gamma prior for precision
κ.
mdkarcher/phylodyn documentation built on Nov. 24, 2021, 12:20 a.m.
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Description
Nonparametric estimate of sampling intensity
Usage
1 2 | BNPR_samp_only(data, lengthout = 100, grid = NULL, tmrca = NULL,
prec_alpha = 0.01, prec_beta = 0.01)
|
Arguments
data |
|
lengthout |
numeric specifying number of grid points. |
grid |
numeric vector of endpoints of the latent field. |
tmrca |
numeric optional value to specify end of grid. Useful for having the same grid as a coalescent inference. |
prec_alpha, prec_beta |
numerics specifying gamma prior for precision κ. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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