View source: R/plotting_tools.R
Plot Seasonality
1 2 3 4 5 6 7 | plot_seasonality(BNPR_out, zero_date, start = 0, years = NULL,
period = 1, ylim = NULL, nbreaks = 40, lty = 1, lwd = 2,
col_years = "gray", col_mean = "black", main = "", axlabs = NULL,
xlab = "Time", xmarline = 3, ylab = "Effective Population Size",
log_y = TRUE, heatmaps = TRUE, heatmap_labels = TRUE,
heatmap_labels_side = "right", heatmap_width = 7, legend = NULL,
yscale = 1, ...)
|
BNPR_out |
output of BNPR or BNPR_PS. |
zero_date |
numeric which time to present as 0 on graph. |
start |
numeric when to start displaying data. |
years |
numeric how many years to count back in time. |
period |
numeric how long of a period is a "year". |
ylim |
numeric y-axis interval. |
nbreaks |
integer number of bins for sampling heatmap. |
lty |
numeric line type for the estimated trajectory paths. |
lwd |
numeric line width for the estimated trajectory paths. |
col_years |
color of year paths. |
col_mean |
color of mean path. |
main |
character main plot title. |
axlabs |
character vector x-axis labels. |
xlab |
character x-axis label. |
xmarline |
numeric if not using default x-axis labels, how far to put the labels from the axis. |
ylab |
character y-axis label. |
log_y |
logical whether to log-scale the y-axis. |
heatmaps |
boolean whether to display sampling and coalescent heatmaps. |
heatmap_labels |
boolean whether to display labels on heatmaps. |
heatmap_labels_side |
string which side of plot to display heatmaps. |
heatmap_width |
numeric how wide heatmaps should be. |
legend |
character legend text. The defauly, NULL, disables. |
yscale |
numeric scaling applied to all effective population calculations. |
... |
additional arguments to be passed onto plot(). |
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