Description Usage Arguments Value
Posterior predictive check for coalescent model
1 2 | posterior_coal_check(coal_times, samp_times, n_sampled, logpop, grid,
cap = NULL)
|
coal_times |
numeric vector (for fixed-tree) or numeric vector (for inferred-tree) of coalescent times. |
samp_times |
numeric vector of sampling times. |
n_sampled |
integer vector of lineages sampled at each sampling time. |
logpop |
matrix posterior sample of log-effective population sizes. |
grid |
numeric grid of time points. |
cap |
integer maximum number of posterior samples to use. |
data.frame with two columns: "obs" contains the KS discrepancies for the supplied coalescent times, "rep" contains the KS discrepancies for the replicated coalescent times.
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