plot_mrw: Plot Mean Relative Widths
In mdkarcher/phylodyn: Statistical Tools for Phylodynamics

Plot Mean Relative Widths

plot_mrw(BNPR_outs, traj = NULL, xlim = NULL, ylim = NULL,
  nbreaks = 40, ltys = 1, lwds = 2, cols = "black",
  xlab = "Time", xmarline = 3, axlabs = NULL, ymin_zero = FALSE,
  ylab = "Mean Relative Width", main = "", heatmaps = TRUE,
  heatmap_labels = FALSE, heatmap_labels_side = "right",
  heatmap_width = 7, legends = NULL, legend_place = "topleft",
  legend_cex = 1, bty = "n", ...)

`BNPR_outs`	one or more outputs of BNPR or BNPR_PS.
`traj`	function summarizing the true effective population size trajectory.
`xlim`	numeric x-axis interval.
`ylim`	numeric y-axis interval.
`nbreaks`	integer number of bins for sampling heatmap.
`ltys`	line types for estimated trajectories.
`lwds`	line widths for estimated trajectories.
`cols`	colors for estimated trajectories.
`xlab`	character x-axis label.
`xmarline`	numeric if not using default x-axis labels, how far to put the labels from the axis.
`axlabs`	character vector x-axis labels.
`ymin_zero`	logical
`ylab`	character y-axis label.
`main`	character main plot title.
`heatmaps`	boolean whether to display sampling and coalescent heatmaps.
`heatmap_labels`	boolean whether to display labels on heatmaps.
`heatmap_labels_side`	string which side of plot to display heatmaps.
`heatmap_width`	numeric how wide heatmaps should be.
`legends`	character legend texts.
`legend_place`	character location of legend pane. See legend().
`legend_cex`	numeric expansion factor for legend pane.
`bty`	integer box type. See legend().
`...`	additional arguments to be passed onto plot().