Description Usage Arguments Value
Set fixed parameters for prior, likelihood, and posterior calculations.
1 2 3 | initialize_params(samp_times, n_sampled, coal_times, grid,
prec_alpha = 0.01, prec_beta = 0.01, betas_prec = diag(c(0.01,
0.01)), covar_vals = NULL)
|
samp_times |
vector of sampling times. |
n_sampled |
integer vector of number of tips sampled at each sampling time. |
coal_times |
vector of coalescent times. |
grid |
vector of grid end points. |
prec_alpha |
numeric alpha hyperparameter for precision parameter (default 0.01). |
prec_beta |
numeric beta hyperparameter for precision parameter (default 0.01). |
betas_prec |
matrix precision matrix for beta parameters. |
covar_vals |
matrix of covariate values at each of the grid midpoints. |
list containing all the parameters necessary to use logprior_[], loglik_[] and logposterior_[] functions.
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