initialize_params: Set fixed parameters for prior, likelihood, and posterior...

In mdkarcher/phylodyn: Statistical Tools for Phylodynamics

Description

Set fixed parameters for prior, likelihood, and posterior calculations.

Usage

initialize_params(samp_times, n_sampled, coal_times, grid,
  prec_alpha = 0.01, prec_beta = 0.01, betas_prec = diag(c(0.01,
  0.01)), covar_vals = NULL)

Arguments

samp_times	vector of sampling times.
n_sampled	integer vector of number of tips sampled at each sampling time.
coal_times	vector of coalescent times.
grid	vector of grid end points.
prec_alpha	numeric alpha hyperparameter for precision parameter (default 0.01).
prec_beta	numeric beta hyperparameter for precision parameter (default 0.01).
betas_prec	matrix precision matrix for beta parameters.
covar_vals	matrix of covariate values at each of the grid midpoints.

Value

list containing all the parameters necessary to use logprior_[], loglik_[] and logposterior_[] functions.

mdkarcher/phylodyn documentation built on Nov. 24, 2021, 12:20 a.m.