Description Author(s) References See Also Examples
Statistical tools for reconstructing population size from genetic sequence data.
Michael Karcher, Julia Palacios, Shiwei Lan, Vladimir Minin
Maintainer: Michael Karcher <mkarcher@uw.edu>
1. A. Rambaut, O. G. Pybus, M. I. Nelson, C. Viboud, J. K. Taubenberger, E. C. Holmes [The genomic and epidemiological dynamics of human influenza A virus](http://www.nature.com/doifinder/10.1038/nature06945). *Nature*, 453(7195): 615-619, 2008.
2. J. A. Palacios and V. N. Minin. [Integrated nested Laplace approximation for Bayesian nonparametric phylodynamics](http://www.auai.org/uai2012/papers/310.pdf). In *Proceedings of the Twenty-Eighth International Conference in Uncertainty in Artificial Intelligence*, pages 726-735, 2012.
3. D. Zinder, T. Bedford, E. B. Baskerville, R. J. Woods, M. Roy, M. Pascual. [Seasonality in the migration and establishment of H3N2 Influenza lineages with epidemic growth and decline](http://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-014-0272-2). *BMC Evolutionary Biology*, 14(1): 272, 2014.
4. S. Lan, J. A. Palacios, M. Karcher, V. N. Minin, and B. Shahbaba [An Efficient Bayesian Inference Framework for Coalescent-Based Nonparametric Phylodynamics](http://bioinformatics.oxfordjournals.org/content/31/20/3282), *Bioinformatics*, 31(20): 3282-3289, 2015.
5. M. D. Karcher, J. A. Palacios, T. Bedford, M. A. Suchard, and V. N. Minin. [Quantifying and mitigating the effect of preferential sampling on phylodynamic inference](http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004789). *PLOS Computational Biology*, 12:e1004789, 2016.
6. J.A Palacios, J. Wakeley, and S. Ramachandran. [Bayesian nonparametric inference of population size changes from sequential genealogies.](http://www.genetics.org/content/early/2015/07/28/genetics.115.177980) *Genetics* Vol. 201:281-304, 2015.
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