Multiple omics data integrative clustering and gene set analysis

annotate.gs | Summary annotation information of a gene set |

biSoftK | NIPALS algorithm with soft thresholding operator on rows and... |

bootMbpca | Bootstrap mbpca to estimate the coherence of different data... |

bootMbpcaK | An internal function called by 'bootMbpca'. |

bootMoa | Significant components in "moa" returned by function "moa". |

box.gs.feature | boxplot of gene set variables across all samples. |

combine-methods | Combine two objects of class 'mgsa' into one. |

decompose.gs.group | Data-wise or PC-wise decomposition of gene set scores for all... |

decompose.gs.ind | Data-wise or PC-wise decomposition of gene set scores for a... |

deflat | deflat function used by 'mbpca' |

distMoa | Calculate the distance matrix from an object of class... |

getmgsa | get values in an object of class "mgsa". |

GIS | calculate gene influential scores of genes in a gene set. |

matpower | compute the power of a matrix |

mbpca | Extension of PCA to analyze multiple data sets |

mgsa-class | Class '"mgsa"' |

moa | Multiple omics data analysis using MFA or STATIS |

moa-class | plot moa object |

moaCoef | Extract the loadings/coefficients from an object of class... |

moaScore | Extract global scores from an object of class 'moa-class'. |

moa.sup-class | Class '"moa.sup"' |

moGap | Gap statistic for clustering latent variables in 'moa-class'. |

mogsa | multiple omics data integration and gene set analysis |

mogsa-package | Multiple omics clustering and gene set analysis |

msvd | SVD based algorithm to calculate block Score and global... |

NCI60_4arrays | Microarray gene expression profiles of the NCI 60 cell lines... |

NCI60_4array_supdata | supp data for Microarray gene expression profiles of the NCI... |

nipalsSoftK | NIPALS algorithm with soft thresholding operator |

pairwise.rv | pairwise RV coefficients. |

plotGS | Plot the gene set space |

plot-methods | Methods for function 'plot' |

prepGraphite | Prepare pathway gene sets from graphite package |

prepMsigDB | Conver gmt format file to a list |

prepSupMoa | Prepare sumpplementary tables for projection by sup.moa or... |

print-methods | Methods for function 'print' |

processOpt | preprocessing of input data in 'mbpca'. |

show-methods | Methods for function 'show' |

softK | Soft-thresholding operator |

softSVD | penalized SVD |

summary-methods | Methods for function 'summary' |

sup.moa | Projecting supplementary tables on object of class... |

svd.nipals | singular valude decomposition using NIPALS algorithm |

svd.solver | Singular Value Decomposition of a Matrix |

toMoa | convert 'mbpca' result to 'moa-class' |

wsvd | Weighted singular value decomposition (SVD) |

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