moa.sup-class: Class '"moa.sup"'

Description Objects from the Class Slots Methods Author(s) See Also Examples

Description

moa.sup class desc.

Objects from the Class

Objects can be created by calls of the form new("moa.sup", ...).

Slots

sup:

Object of class "list", the matrix of supplementary data.

coord.sep:

The projection of geneset infromation on each separate data.

coord.comb:

The projection of geneset infromation on total dataset.

score:

the gene set-sample pathway score

score.data:

the gene set-sample pathway score, data separate

score.pc:

the gene set-sample pathway score, PC separate

score.sep:

the gene set-sample pathway score, separate.

p.val:

the p value matrix have the same dimension with score matrix.

Methods

There is no generic function for objects of "moa.sup", but have specific function, including: - decompose.gs.ind - box.gs.feature - plotGS - decompose.gs.group

Author(s)

Chen Meng

See Also

objects to See Also as decompose.gs.ind, box.gs.feature, plotGS, decompose.gs.group.

Examples

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	showClass("moa.sup")
	data(NCI60_4array_supdata)
	data(NCI60_4arrays)

	sapply(NCI60_4array_supdata, dim)
	ana <- moa(NCI60_4arrays, proc.row = "center_ssq1", w.data = "inertia", statis = TRUE)
	plot(ana, value="eig")
	smoa <- sup.moa(ana, sup=NCI60_4array_supdata, nf=5)

mengchen18/mogsa documentation built on Nov. 23, 2017, 1:57 a.m.