bootMbpcaK: An internal function called by 'bootMbpca'.

In mengchen18/mogsa: Multiple omics data integrative clustering and gene set analysis

Description

An internal function called by bootMbpca.

Usage

bootMbpcaK(
  data,
  replace,
  B = 100,
  mc.cores = 1,
  resample = c("sample", "total", "gene"),
  ncomp,
  method,
  k,
  center = FALSE,
  scale = FALSE,
  option = "uniform",
  maxiter = 1000,
  svd.solver = c("svd", "fast.svd", "propack")
)

Arguments

data	A list of matrix to bootstrap.
replace	A logical variable to indicate sampling with or without replacement
B	Integer; number of bootstrap.
mc.cores	Integer; number of cores used in bootstrap. This value is passed to function mclapply
resample	Could be one of "sample", "gene" or "total". "sample" and "gene" means sample-wise and variable-wise resampling, repectively. "total" means total resampling.
ncomp	passed to mbpca.
method	passed to mbpca.
k	passed to mbpca.
center	passed to mbpca.
scale	passed to mbpca.
option	passed to mbpca.
maxiter	passed to mbpca.
svd.solver	passed to mbpca.

Value

A matrix of mbpca eigenvalues resulted from bootstrap samples

Author(s)

Chen Meng

See Also

bootMbpca

mengchen18/mogsa documentation built on June 7, 2020, 6:05 p.m.