prepMsigDB: Conver gmt format file to a list

Description Usage Arguments Value Author(s) See Also Examples

View source: R/preGeneSet.R

Description

Convert a gmt file (Could be downloaded from MSigDB) to a list of gene sets information.

Usage

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Arguments

file

The directory and file name of the gmt file.

Value

This function returns an object of list containing gene set information, which could be further processed by function "prepSupMoa" to convert to the object that can be used as input of "sup.moa" or "mogsa".

Author(s)

Chen Meng

See Also

See Also as prepGraphite and prepSupMoa.

Examples

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	# not run
	dir <- system.file(package = "mogsa")
	preGS <- prepMsigDB(file=paste(dir, 
		"/extdata/example_msigdb_data.gmt.gz", sep = ""))

mengchen18/mogsa documentation built on Nov. 23, 2017, 1:57 a.m.