API for metamaden/rmpipeline
Process DNAm array IDATs into database files

Global functions
append_md Man page Source code
append_md_h5db Man page Source code
append_md_h5se Man page Source code
append_md_snakemake Man page Source code
appendvar Man page Source code
check_h5_database Man page Source code
control_biotinstaining Man page Source code
control_bsconversion Man page Source code
control_extension Man page Source code
control_hybridization Man page Source code
control_nonpolymorphic Man page Source code
control_restoration Man page Source code
control_specificity Man page Source code
control_targetremoval Man page Source code
data_mdpost Man page Source code
df_bathresh Man page Source code
do_h5se_merge Man page Source code
dt_checkidat Man page Source code
dt_makefiles Man page Source code
dt_write_rg Man page Source code
dtables_rg Man page Source code
get_all_md Man page Source code
get_atables Man page Source code
get_background Man page Source code
get_bactrl Man page Source code
get_bathresh Man page Source code
get_eqfpath Man page Source code
get_filt Man page Source code
get_gsm_exclude Man page Source code
get_h5db_gm Man page Source code
get_h5db_gr Man page Source code
get_h5db_rg Man page Source code
get_h5se_gm Man page Source code
get_h5se_gr Man page Source code
get_h5se_rg Man page Source code
get_idat_sizem Man page Source code
get_jsontitle Man page Source code
get_mddnam Man page Source code
get_mdmap Man page Source code
get_metadata Man page Source code Source code
get_msrap Man page Source code
get_pstr Man page Source code
get_pstr_neg Man page Source code Source code
get_qcmetrics Man page Source code
get_replicates Man page Source code
get_rg_dtables Man page Source code
getblocks Man page Source code Source code
h5_add_tables Man page Source code
h5_addmd Man page Source code
make_h5_gm Man page Source code
make_h5_gr Man page Source code
make_h5db_rg Man page Source code
make_h5se_gm Man page Source code
make_h5se_gr Man page Source code
make_h5se_rg Man page Source code
match1to2 Man page Source code
md_age_infol Man page Source code
md_age_unitl Man page Source code
md_agg Man page Source code
md_post_cancer Man page Source code
md_post_cancertype Man page Source code
md_post_disease Man page Source code
md_post_handle_age Man page Source code
md_post_leukemia Man page Source code
md_post_storage Man page Source code
md_post_tissue Man page Source code
md_post_tissue_blood Man page Source code
md_postprocess Man page Source code
md_predictions Man page Source code
md_preprocess Man page Source code
mdpre_vars Man page Source code
mdpre_vars_age Man page Source code
mdpre_vars_disease Man page Source code
mdpre_vars_info Man page Source code
mdpre_vars_sex Man page Source code
mdpre_vars_tissue Man page Source code
new_instance_md Man page Source code
rmp_handle_metadata Man page Source code
rmp_handle_platform Man page Source code
se_addpheno Man page Source code
metamaden/rmpipeline documentation built on Jan. 12, 2023, 3:20 p.m.