append_md_h5se: Append metadata to HDF5-SummarizedExperiment DNAm data...

In metamaden/rmpipeline: Process DNAm array IDATs into database files

Append metadata to HDF5-SummarizedExperiment DNAm data compilation file

Description

Append metadata to DNAm HDF5-SummarizedExperiment data compilations.

Usage

append_md_h5se(
  ts,
  mdall,
  comp.fpath,
  id.cname = "gsm",
  overwrite = TRUE,
  verbose = TRUE
)

Arguments

ts	Timestamp.
mdall	Valid metadata table containing column id.cname.
comp.fpath	File path to a valid h5se compilation file.
id.cname	Sample ID column name in mdall ("gsm").
overwrite	Whether to overwrite existing metadata (TRUE).
verbose	Whether to show status messages (TRUE).

Value

NULL, saves h5se object with appended metadata.

metamaden/rmpipeline documentation built on Jan. 12, 2023, 3:20 p.m.